saveSCEFile: Save SCEmbroider files
In jung361/SCEmbroider:
Description
Usage
Arguments
Value
Description
Save a Seurat Object into SCEmbroider files. These file is used when loading new data in SCEmbroider program. Runs PCA, TSNE, UMAP if do not exists.
Usage
1
saveSCEFile(object, path, assay = "RNA", dims = 1:5, cluster.id = NULL)
Arguments
object
A Seurat object
path
Path of directory to save files
assay
Name of Assay to make files
dims
Which dimensions to use as input features (Only if pca, tsne or umap is missing)
cluster.id
If set, save name of the cluster idents with this column instead of default idents
Value
A Seurat object modified in this function
jung361/SCEmbroider documentation built on Dec. 21, 2021, 4:19 a.m.
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Description Usage Arguments Value
Description
Save a Seurat Object into SCEmbroider files. These file is used when loading new data in SCEmbroider program. Runs PCA, TSNE, UMAP if do not exists.
Usage
1 | saveSCEFile(object, path, assay = "RNA", dims = 1:5, cluster.id = NULL)
|
Arguments
object |
A Seurat object |
path |
Path of directory to save files |
assay |
Name of Assay to make files |
dims |
Which dimensions to use as input features (Only if pca, tsne or umap is missing) |
cluster.id |
If set, save name of the cluster idents with this column instead of default idents |
Value
A Seurat object modified in this function
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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