predatorFAs: Predator fatty acid signatures. Each predator signature is a...

In justinkamerman/QFASA: Quantitative Fatty Acid Signature Analysis

Predator fatty acid signatures. Each predator signature is a row with fatty acid proportions in columns.

Description

Fatty acid signatures are subsetted for the chosen fatty acid set and renormalized during the modelling so there is no need to subset and/or renormalize prior to running p.QFASA. However, make sure that the the same fatty acids appear in the predator and prey files (if a FA appears in one but not the other the code will give you an error).

Usage

predatorFAs

Format

A data frame with 10 observations and 70 variables:

SampleCode

TODO

AnimalCode

TODO

SampleGroup

TODO

Biopsy

TODO

c12.0

c13.0

Iso14

c14.0

c14.1w9

c14.1w7

c14.1w5

Iso15

Anti15

c15.0

c15.1w8

c15.1w6

Iso16

c16.0

c16.1w11

c16.1w9

c16.1w7

c7Mec16.0

c16.1w5

c16.2w6

Iso17

c16.2w4

c16.3w6

c17.0

c16.3w4

c17.1

c16.4w3

c16.4w1

c18.0

c18.1w13

c18.1w11

c18.1w9

c18.1w7

c18.1w5

c18.2d5.11

c18.2w7

c18.2w6

c18.2w4

c18.3w6

c18.3w4

c18.3w3

c18.3w1

c18.4w3

c18.4w1

c20.0

c20.1w11

c20.1w9

c20.1w7

c20.2w9

c20.2w6

c20.3w6

c20.4w6

c20.3w3

c20.4w3

c20.5w3

c22.1w11

c22.1w9

c22.1w7

c22.2w6

c21.5w3

c22.4w6

c22.5w6

c22.4w3

c22.5w3

c22.6w3

c24.1w9

Details

Unlike the original QFASApack code the predator data can contain as much tombstone data in columns as you wish but the predator FA signatures must be extracted as a separate input in order to run in p.QFASA.

justinkamerman/QFASA documentation built on Nov. 17, 2023, 12:33 p.m.