bar_plot_update_manual: Creates individual barplots for each metabolite defined in...

In juyeki/MetabR: Functions to assist in the current UCLA Metabolomics Quality Control and Analysis Pipeline.

Description

This function is internally called by bar_update_manual and creates the relative amount barplots for each of the metabolites defined in the pathway of interest.

Usage

bar_plot_update_manual(a, met, Title, axis.text.x, scales, type = NULL, num_cond = NULL)

Arguments

a	a ggplot barplot that has the conditions on the x axis and the normalized averages along the y axis.
met	The subsetted data frame containing only the metabolites in the pathway of interest.
Title	The title that will go on the top of each page of the output pdf.
axis.text.x	Customization of x-axis. Default of bar_plot_update is element_blank().
scales	Customization of scales. Default of bar_plot_update is "free".
type	The type of quality control or analysis to be run. eg. "250k". This argument is inherited from bar_plot_update when it is called.
num_cond	The number of conditions in the experiment
index	A list of two vectors, the first one containing the indices of the 250Ks and the second one containing the indices of the blanks.

Author(s)

Gerardo Javier, Daniel Tan, Jordan Uyeki

juyeki/MetabR documentation built on Aug. 6, 2020, 3:32 a.m.