new.genome: New R-API MaveDB genome

In jweile/rapimave: R API for MaveDB

Description

Internal constructor that creates an immutable new genome object. This function is not exported and should not be called outside of the rapimave package itself. Genome objects are generated by the getGenome() method of a reference map object (which itself is generated using the get.referenceMaps() method on a target object). However, this section explains the functions that are available for these objects.

Usage

new.genome(data)

Details

A ScoreSet object offers the following getter functions:

• getShortName() returns the name of this genome object

• getOrganism() returns the species to which this genome belongs.

• getAssemblyID() returns the a cross-reference object for the assembly ID.

Value

a new R-API MaveDB genome object.

jweile/rapimave documentation built on Aug. 4, 2021, 12:12 a.m.