NetBID.saveRData: Save Data Produced by Corresponding NetBID2 Pipeline Step.

In jyyulab/NetBID: Network-based Bayesian Inference of Drivers, version 2

Save Data Produced by Corresponding NetBID2 Pipeline Step.

Description

NetBID.saveRData is a function to save complicated list object generated by certain steps of NetBID2's pipeline (e.g. load gene expression file from GEO, 'exp-load'). This function is not essential, but it is highly suggested for easier pipeline step checkout and reference.

Usage

NetBID.saveRData(network.par = NULL, analysis.par = NULL, step = "exp-load")

Arguments

network.par	list, stores all related datasets from network construction pipeline step.
analysis.par	list, stores all related datasets from driver analysis pipeline step.
step	character, name of the pipeline step decided by user for easier reference.

Details

There are two important steps in the NetBID2 pipeline, network construction and driver analysis. User can save these two complicated list objects, network.par and analysis.par. Assigning the step name to save the RData for easier reference. Calling NetBID.loadRData to load the corresponding step RData, users can avoid repeating the former steps.

Examples

## Not run: 
analysis.par <- list()
analysis.par$out.dir.DATA <- system.file('demo1','driver/DATA/',package = "NetBID2")
NetBID.loadRData(analysis.par=analysis.par,step='ms-tab')
NetBID.saveRData(analysis.par=analysis.par,step='ms-tab_test')

## End(Not run)

jyyulab/NetBID documentation built on Dec. 23, 2024, 6:34 a.m.