merge_TF_SIG.network: Merge TF (transcription factor) Network and Sig (signaling...

In jyyulab/NetBID: Network-based Bayesian Inference of Drivers, version 2

Merge TF (transcription factor) Network and Sig (signaling factor) Network

Description

merge_TF_SIG.network takes TF network and Sig network and combine them together. The merged list object contains three elements, a data.frame contains all the combined network information network_dat, a driver-to-target list object target_list, and an igraph object of the network igraph_obj.

Usage

merge_TF_SIG.network(TF_network = NULL, SIG_network = NULL)

Arguments

TF_network	list, the TF network created by get.SJAracne.network function.
SIG_network	list, the SIG network created by get.SJAracne.network function.

Value

Return the a list containing three elements, network_dat, target_list and igraph_obj.

Examples

if(exists('analysis.par')==TRUE) rm(analysis.par)
network.dir <- sprintf('%s/demo1/network/',system.file(package = "NetBID2")) # use demo
network.project.name <- 'project_2019-02-14' # demo project name
project_main_dir <- 'test/'
project_name <- 'test_driver'
analysis.par  <- NetBID.analysis.dir.create(project_main_dir=project_main_dir,
                                            project_name=project_name,
                                            network_dir=network.dir,
                                            network_project_name=network.project.name)
analysis.par$tf.network  <- get.SJAracne.network(network_file=analysis.par$tf.network.file)
analysis.par$sig.network <- get.SJAracne.network(network_file=analysis.par$sig.network.file)
analysis.par$merge.network <- merge_TF_SIG.network(TF_network=analysis.par$tf.network,
                                                   SIG_network=analysis.par$sig.network)

jyyulab/NetBID documentation built on Dec. 23, 2024, 6:34 a.m.