run_goana: Run gene ontology enrichment analysis
In jzsh2000/jzshr: jzsh2000's R Code

Description Usage Arguments Value See Also Examples

Find enriched GO terms from a list of gene entrez id or gene symbol.

1	run_goana(de, species = "Hs", FDR = 0.01, N.min = 10)

`de`	a character vector of Entrez Gene IDs, or a list of such vectors, or an 'MArrayLM' fit object.
`species`	character string specifying the species. Possible values include "Hs" (human), "Mm" (mouse), "Rn" (rat), "Dm" (fly) or "Pt" (chimpanzee), but other values are possible if the corresponding organism package is available.
`FDR`	false discovery rate cutoff for differentially expressed genes. Numeric value between 0 and 1.
`N.min`	minimal number of genes in a GO term

a data_frame

goana

gene_list = c('SIGLEC1', 'ADAM33', 'PPP1R14A', 'FFAR1', 'CD22', 'DNASE2',
              'TNFSF13', 'CCND3', 'VASH1', 'RNF141', 'MED12L', 'SIGLEC6',
              'GPR160', 'POU3F1', 'AXL', 'ING1', 'EPHB4', 'SLC1A4', 'B3GNT7',
              'ATP1A2', 'SPOCK2', 'TGFBR1', 'LRRC8A', 'LTA4H', 'VASN', 'LTK',
              'CDH1')
run_goana(gene_list, FDR = 0.05)