renderAmpCurves: Renders an amplification curves viewer

In kablag/shinyMolBio: Molecular Biology Visualization Tools for 'Shiny' Apps

Renders an amplification curves viewer

Description

Renders a reactive PCR amplification plot that is suitable for assigning to an UI output slot.

Usage

renderAmpCurves(inputId, label = NULL, ampCurves, colorBy = NULL,
  linetypeBy = NULL, logScale = FALSE, showCq = FALSE, showLegend = FALSE,
  thBy = NULL, plotlyCode = NULL, cssFile = NULL, cssText = NULL,
  interactive = TRUE)

Arguments

inputId	The input slot that will be used to modify plot.
label	Display label for the control, or NULL for no label.
ampCurves	Amplification curves data with RDML$GetFData(long.table = TRUE) format. Columns hideCurve and highlightCurve defines which curve will be hidden or highlighted respectively.
colorBy	Column name that contains color levels data.
linetypeBy	Column name that contains linetype levels data.
logScale	Converts plot to log(RFU).
showCq	Shows Cq with dots (cq and quantFluor columns have to be provided!).
showLegend	Show plot legend.
thBy	Column name that separates threshold values (quantFluor column have to be provided!).
plotlyCode	Your quoted custom plotly code.
cssFile	Path to the css styles file.
cssText	CSS styles as text.
interactive	Should be this pcrPlate interactive or not.

Author(s)

Konstantin A. Blagodatskikh <[e-mail]>

See Also

updateCurves

Other render elements: renderADplot(), renderMeltCurves()

Examples

library(RDML)
rdml <- RDML$new(system.file("/extdata/test.rdml", package = "shinyMolBio"))
curves <- renderAmpCurves("curves1", ampCurves = rdml$GetFData(long.table = TRUE))
curves

kablag/shinyMolBio documentation built on Nov. 8, 2024, 10:06 a.m.