filterInputDF: Filter input data frame rows

In kaistcbfg/covNormRpkg: an R package for coverage based normaliza-tion of Hi-C and capture Hi-C data

Description

Takes formatted dataframe and filtered df

Usage

filterInputDF(
  df,
  check_trans_values = TRUE,
  remove_zero_contact = TRUE,
  self_ligation_distance = 15000
)

Arguments

df	Input data frame.
check_trans_values	If TRUE, rows containing trans interactions dropped.
remove_zero_contact	If TRUE, rows wifh $freq value 0 dropped.
self_ligation_distance	Distance between two fragments regarded as self-ligation. Default 15kb.

Value

df with rows filtered

kaistcbfg/covNormRpkg documentation built on June 23, 2021, 12:55 p.m.