normDistance: Distance normalization function

In kaistcbfg/covNormRpkg: an R package for coverage based normaliza-tion of Hi-C and capture Hi-C data

Description

Takes formatted dataframe and retunrs glm.nb fitted coeffs & normalized df

Usage

normDistance(df, max_dist = -1, max_distnorm_value = 50, sample_ratio = -1)

Arguments

df	An input dataframe, coverage normalized.
max_dist	If > 0, Rows with larger $dist values will be dropped.
max_distnorm_value	Outliers by division with too small a number are replaced by this value.
sample_ratio	If NOT -1 && between 0.0-1.0, downsample the df rows to be used for fitting by that ratio.

Value

df Distance normalized.

kaistcbfg/covNormRpkg documentation built on June 23, 2021, 12:55 p.m.