API for kalden/spartan
Simulation Parameter Analysis R Toolkit ApplicatioN: 'spartan'

Global functions
a_test_results Man page
aa_getATestResults Man page Source code
aa_getATestResults_overTime Man page Source code
aa_graphATestsForSampleSize Man page Source code
aa_graphSampleSizeSummary Man page Source code
aa_sampleSizeSummary Man page Source code
aa_sampleSizeSummary_overTime Man page Source code
aa_summariseReplicateRuns Man page Source code
aa_summariseReplicateRuns_overTime Man page Source code
add_parameter_value_to_file Man page Source code
analysenetwork_structures Man page Source code
append_time_to_argument Man page Source code
atest Man page Source code
build_curve_results_from_r_object Man page Source code
build_performance_statistics Man page Source code
calculate_atest_score Man page Source code
calculate_fold_MSE Man page Source code
calculate_medians_for_all_measures Man page Source code
calculate_prcc_for_all_measures Man page Source code
calculate_prccs_all_parameters Man page Source code
calculate_weights_for_ensemble_model Man page Source code
check_acceptable_model_type Man page Source code
check_argument_positive_int Man page Source code
check_boolean Man page Source code
check_column_ranges Man page Source code
check_confidence_interval Man page Source code
check_consistency_result_type Man page Source code
check_data_partitions Source code
check_double_value_in_range Man page Source code
check_file_exist Man page Source code
check_file_exists Man page Source code
check_file_extension Man page Source code
check_filepath_exists Man page Source code
check_function_dependent_paramvals Man page Source code
check_global_param_sampling_args Man page Source code
check_graph_output_type Man page Source code
check_input_args Man page Source code
check_lengths_parameters_ranges Man page Source code
check_lhs_algorithm Man page Source code
check_list_all_integers Man page Source code
check_nested_filepaths Man page Source code
check_netlogo_parameters_and_values Man page Source code
check_numeric_list_values Man page Source code
check_package_installed Man page Source code
check_parameters_and_ranges Man page Source code
check_paramvals_length_equals_parameter_length Man page Source code
check_ranges Source code
check_robustness_parameter_and_ranges_lengths Man page Source code
check_robustness_paramvals_contains_baseline Man page Source code
check_robustness_range_contains_baseline Man page Source code
check_robustness_range_or_values Man page Source code
check_robustness_sampling_args Man page Source code
check_text Man page Source code
check_text_list Man page Source code
close_and_write_netlogo_file Man page Source code
compare_all_values_of_parameter_to_baseline Man page Source code
compare_result_sets_to_comparison_set Source code
construct_result_filename Man page Source code
createAndEvaluateFolds Man page Source code
createTrainingFold Man page Source code
create_abc_settings_object Man page Source code
create_ensemble Man page Source code
create_neural_network Man page Source code
createtest_fold Man page Source code
dataset_precheck Man page Source code
denormalise_dataset Man page Source code
determine_optimal_neural_network_structure Man page Source code
efast_cvmethod Man page Source code
efast_generate_medians_for_all_parameter_subsets Man page Source code
efast_generate_medians_for_all_parameter_subsets_overTime Man page Source code
efast_generate_sample Man page Source code
efast_generate_sample_netlogo Man page Source code
efast_get_overall_medians Man page Source code
efast_get_overall_medians_overTime Man page Source code
efast_graph_Results Man page Source code
efast_netlogo_get_overall_medians Man page Source code
efast_netlogo_run_Analysis Man page Source code
efast_parameterdist Man page Source code
efast_process_netlogo_result Man page Source code
efast_run_Analysis Man page Source code
efast_run_Analysis_from_DB Man page Source code
efast_run_Analysis_overTime Man page Source code
efast_sd Man page Source code
efast_setfreq Man page Source code
efast_ttest Man page Source code
emulate_efast_sampled_parameters Man page Source code
emulate_lhc_sampled_parameters Man page Source code
emulated_lhc_values Man page
emulation_algorithm_settings Man page Source code
emulator_parameter_evolution Man page Source code
emulator_predictions Man page Source code
ensemble_abc_wrapper Man page Source code
execute_checks Man page Source code
exemplar_sim_output Man page
extract_predictions_from_result_list Man page Source code
format_efast_result_for_output Man page Source code
generate_a_test_results_header Man page Source code
generate_a_test_score Man page Source code
generate_efast_parameter_sets Man page Source code
generate_emulator_model Man page Source code
generate_emulators_and_ensemble Man page Source code
generate_ensemble_from_existing_emulations Man page Source code
generate_ensemble_training_set Man page Source code
generate_headers_for_atest_file Man page Source code
generate_list_of_checks Man page Source code
generate_medians_for_param_set Man page Source code
generate_model_formula Man page Source code
generate_parameter_table Man page Source code
generate_prcc_results_header Man page Source code
generate_predictions_from_emulator Man page Source code
generate_requested_emulations Man page Source code
generate_scores_for_all_sample_sizes Source code
generate_sensitivity_indices Man page Source code
generate_summary_stats_for_all_param_sets Man page Source code
getMediansSubset Man page Source code
get_argument_correct_case Man page Source code
get_correct_file_path_for_function Man page Source code
get_file_and_object_argument_names Man page Source code
get_max_and_median_atest_scores Man page Source code
get_median_results_for_all_measures Man page Source code
get_medians_for_size_subsets Man page Source code
graph_Posteriors_All_Parameters Man page Source code
graph_sample_size_results Man page Source code
import_model_result Man page Source code
initialise_netlogo_xml_file Man page Source code
join_strings Man page Source code
join_strings_nospace Man page Source code
join_strings_space Man page Source code
kfoldCrossValidation Man page Source code
lhc_calculatePRCCForMultipleTimepoints Man page Source code
lhc_constructcoeff_dataset Man page Source code
lhc_generateLHCSummary Man page Source code
lhc_generateLHCSummary_overTime Man page Source code
lhc_generatePRCoEffs Man page Source code
lhc_generatePRCoEffs_db_link Man page Source code
lhc_generatePRCoEffs_overTime Man page Source code
lhc_generateTimepointFiles Man page Source code
lhc_generate_lhc_sample Man page Source code
lhc_generate_lhc_sample_netlogo Man page Source code
lhc_generate_netlogo_PRCoEffs Man page Source code
lhc_graphMeasuresForParameterChange Man page Source code
lhc_graphMeasuresForParameterChange_from_db Man page Source code
lhc_graphMeasuresForParameterChange_overTime Man page Source code
lhc_netlogo_graphMeasuresForParameterChange Man page Source code
lhc_plotCoEfficients Man page Source code
lhc_polarplot Man page Source code
lhc_process_netlogo_result Man page Source code
lhc_process_sample_run_subsets Man page Source code
lhc_process_sample_run_subsets_overTime Man page Source code
make_extension Man page Source code
make_filename Man page Source code
make_graph_title Man page Source code
make_lhc_plot Man page Source code
make_path Man page Source code
meanSquaredError Man page Source code
normaliseATest Man page Source code
normalise_dataset Man page Source code
nsga2_set_user_params Man page Source code
num.decimals Man page Source code
oat_csv_result_file_analysis Man page Source code
oat_csv_result_file_analysis_from_DB Man page Source code
oat_csv_result_file_analysis_overTime Man page Source code
oat_generate_netlogo_behaviour_space_XML Man page Source code
oat_graphATestsForSampleSize Man page Source code
oat_parameter_sampling Man page Source code
oat_plotResultDistribution Man page Source code
oat_processParamSubsets Man page Source code
oat_processParamSubsets_overTime Man page Source code
oat_process_netlogo_result Man page Source code
output_ggplot_graph Man page Source code
output_param_sets_per_curve Man page Source code
partition_dataset Man page Source code
pcor.mat Man page Source code
pcor.rec Man page Source code
pcor.test Man page Source code
perform_aTest_for_all_sim_measures Man page Source code
plotATestsFromTimepointFiles Man page Source code
plotPRCCSFromTimepointFiles Man page Source code
plot_compare_sim_observed_to_model_prediction Man page Source code
ploteFASTSiFromTimepointFiles Man page Source code
prepare_parameter_value_list Man page Source code
process_netlogo_parameter_range_info Man page Source code
process_parameter_value_if_exists Man page Source code
produce_accuracy_plots_all_measures Man page Source code
produce_accuracy_plots_single_measure Man page Source code
produce_atest_score_summary Man page Source code
produce_summary_for_all_values_of_parameter Man page Source code
rSquared Man page Source code
read_all_curve_results Man page Source code
read_from_csv Man page Source code
read_model_result_file Man page Source code
read_simulation_results Man page Source code
retrieve_results_for_comparison_result_set Man page Source code
sample_parameter_space Man page Source code
scale_lhc_sample Man page Source code
screen_nsga2_parameters Man page Source code
selectSuitableStructure Man page Source code
set.nsga_sensitivity_params Man page Source code
sim_data_for_emulation Man page
subset_results_by_param_value_set Source code
summarise_lhc_sweep_responses Man page Source code
summarise_replicate_runs Man page Source code
tutorial_consistency_set Man page
updateErrorForStructure Man page Source code
use_ensemble_to_generate_predictions Man page Source code
visualise_data_distribution Man page Source code
weight_emulator_predictions_by_ensemble Man page Source code
write_data_to_csv Man page Source code
kalden/spartan documentation built on Nov. 10, 2018, 5:41 p.m.