efast_generate_medians_for_all_parameter_subsets_overTime: Pre-process analysis settings if multiple timepoints are...

In kalden/spartan: Simulation Parameter Analysis R Toolkit ApplicatioN: 'spartan'

Description

Pre-process analysis settings if multiple timepoints are being considered

Usage

efast_generate_medians_for_all_parameter_subsets_overTime(FILEPATH,
  NUMCURVES, PARAMETERS, NUMSAMPLES, NUMRUNSPERSAMPLE, MEASURES,
  RESULTFILENAME, ALTERNATIVEFILENAME, OUTPUTCOLSTART, OUTPUTCOLEND,
  TIMEPOINTS, TIMEPOINTSCALE)

Arguments

FILEPATH	Directory where the simulation runs can be found, in folders or in CSV file format
NUMCURVES	The number of 'resamples' to perform (see eFAST documentation) - recommend using at least 3
PARAMETERS	Array containing the names of the parameters of which parameter samples will be generated
NUMSAMPLES	The number of parameter subsets that were generated in the eFAST design
NUMRUNSPERSAMPLE	The number of runs performed for each parameter subset. This figure can be generated through Aleatory Analysis
MEASURES	Array containing the names of the output measures which are used to analyse the simulation
RESULTFILENAME	Name of the simulation results file. In the current version, XML and CSV files can be processed. If performing this analysis over multiple timepoints, it is assumed that the timepoint follows the file name, e.g. trackedCells_Close_12.csv.
ALTERNATIVEFILENAME	In some cases, it may be relevant to read from a further results file if the initial file contains no results. This filename is set here. In the current version, XML and CSV files can be processed.
OUTPUTCOLSTART	Column number in the simulation results file where output begins - saves (a) reading in unnecessary data, and (b) errors where the first column is a label, and therefore could contain duplicates.
OUTPUTCOLEND	Column number in the simulation results file where the last output measure is. Only required if running the first method.
TIMEPOINTS	Implemented so this method can be used when analysing multiple simulation timepoints. If only analysing one timepoint, this should be set to NULL. If not, this should be an array of timepoints, e.g. c(12,36,48,60)
TIMEPOINTSCALE	Sets the scale of the timepoints being analysed, e.g. "Hours"

kalden/spartan documentation built on May 31, 2019, 11:52 p.m.