View source: R/used_synonyms.R
used_synonyms | R Documentation |
Plots records are rather linked to plant names than plant taxon concepts and
used_synonyms()
lists all synonyms linked to records in a vegtable
object, including their respective accepted names.
On the other side, the function used_concepts()
produces a subset of the
taxonomic list embeded in the slot species including only taxonomic
concepts linked to records in the slot samples.
used_synonyms(x, ...)
## S3 method for class 'vegtable'
used_synonyms(x, ...)
used_concepts(x, ...)
## S3 method for class 'vegtable'
used_concepts(
x,
keep_children = FALSE,
keep_parents = FALSE,
keep_synonyms = TRUE,
...
)
x |
A vegtable object. |
... |
Further arguments to be passed from or to another methods. |
keep_children |
A logical argument indicating whether children of
selected taxa should be included in the output or not.
This argument passed to |
keep_parents |
A logical value indicating whether parents of
selected taxa should be included in the output or not.
This argument passed to |
keep_synonyms |
A logical value indicating whether synonyms should be included or not. |
The function used_synonyms()
returns a data frame including following
variables:
ID of the taxon usage name applied as synonym.
The synonym itself.
Author of synonym.
ID of the respective taxon concept.
ID of the taxon usage name set as accepted name of the taxon concept.
The respective accepted name.
The author of the accepted name.
The function used_concepts()
returns a taxlist object including
only taxa occurring in the plot observations of the input vegtable
object.
Miguel Alvarez kamapu78@gmail.com
accepted_name()
## Synonyms used in the Kenya_veg
Synonyms <- used_synonyms(Kenya_veg)
head(Synonyms)
## Subset species list to used concepts
species <- used_concepts(Kenya_veg)
Kenya_veg@species
species
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