insert_concept: Insert names or concepts in PostgreSQL taxonomic lists

In kamapu/vegtables2: Handling Vegetation Data Sets (Advanced Features)

Description

Insert synonyms to existing taxa in a PostgreSQL version of taxlist objects.

This function is updating the tables taxonNames and names2concepts in the PostgreSQL version of the database.

Usage

insert_concept(conn, ...)

## S3 method for class 'PostgreSQLConnection'
insert_concept(
  conn,
  taxon_names,
  taxon_relations,
  names2concepts,
  taxon_views,
  taxon_levels,
  df,
  clean = TRUE,
  ...
)

insert_concept_swea(conn, ...)

## S3 method for class 'PostgreSQLConnection'
insert_concept_swea(
  conn,
  taxon_names = c("tax_commons", "taxonNames"),
  taxon_relations = c("swea_dataveg", "taxonRelations"),
  names2concepts = c("swea_dataveg", "names2concepts"),
  taxon_views = c("bib_references", "main_table"),
  taxon_levels = c("tax_commons", "taxonLevels"),
  df,
  ...
)

Arguments

conn	A database connection provided by dbConnect().
...	Further arguments passed among methods.
taxon_names, taxon_relations, names2concepts, taxon_views, taxon_levels	Character vectors indicating the name of the respective schemas and tables in database.
df	A data frame with new names and related information (including taxon concept ID).
clean	A logical value indicating cleaning of characters.

kamapu/vegtables2 documentation built on July 8, 2021, 7:57 a.m.