monoptic: Create monoptic objects.

Description Usage Arguments Details Value Author(s) See Also Examples

Description

Create an object of class monoptic where clusters are separated from a VegsoupPartitionFidelity object.

Usage

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monoptic(obj, stat.min = 0.4, p.max = 0.05, coverscale = TRUE)

Arguments

obj

synoptic object.

stat.min

numeric. Threshold value of fidelity statistics.

p.max

numeric. Threshold value of fisher test.

coverscale

logical. Report quantiles in original abundance scale.

Details

The function processes an object of class VegsoupPartitionFidelity and returns an object of class monoptic containing all information separated into clusters. Internally synoptic is called first.

Value

An object of class monoptic.

Author(s)

Roland Kaiser

See Also

synoptic

Examples

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library(vegsoup)
xx <- fidelity(VegsoupPartition(coenoflex(), k = 3))
x <- monoptic(xx)

x

# generate LaTex file
#latex2(x, file = tempfile())

kardinal-eros/synoptic documentation built on Feb. 28, 2021, 2:32 a.m.