monoptic: Create monoptic objects.

In kardinal-eros/synoptic: Synoptic Tables for Vegsoup Objects

Create monoptic objects.

Description

Create an object of class monoptic where clusters are separated from a VegsoupPartitionFidelity object.

Usage

monoptic(obj, stat.min = 0.4, p.max = 0.05, coverscale = TRUE)

Arguments

obj	synoptic object.
stat.min	numeric. Threshold value of fidelity statistics.
p.max	numeric. Threshold value of fisher test.
coverscale	logical. Report quantiles in original abundance scale.

Details

The function processes an object of class ⁠VegsoupPartitionFidelity⁠ and returns an object of class ⁠monoptic⁠ containing all information separated into clusters. Internally ⁠synoptic⁠ is called first.

Value

An object of class ⁠monoptic⁠.

Author(s)

Roland Kaiser

See Also

synoptic

Examples

library(vegsoup)
xx <- fidelity(VegsoupPartition(coenoflex(), k = 3))
x <- monoptic(xx)

x

# generate LaTex file
#latex2(x, file = tempfile())

kardinal-eros/synoptic documentation built on Jan. 13, 2024, 9:16 p.m.