Files in karinorman/communityDimensions
What the Package Does (One Line, Title Case)
.Rbuildignore
.gitignore
DESCRIPTION
R/boral.R
R/boral/correctSpecificationResultsNice.Rmd
R/boral/correctSpecificationResultsNice.md
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R/boral/correctSpecificationResultsNice_files/figure-gfm/unnamed-chunk-9-1.png
R/boral/evaluateCorrectSpecified.R
R/boral/fitCorrectSpecified.R
R/boral/fitLowRankPlus.R
R/boral/jaccardECDF.R
R/boral/model_formulation.pdf
R/boral/svdApprox.Rmd
R/boral/svdApprox.md
R/boral/svdApprox_files/figure-gfm/unnamed-chunk-10-1.png
R/boral/svdApprox_files/figure-gfm/unnamed-chunk-10-2.png
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R/boral/svdApprox_files/figure-gfm/unnamed-chunk-7-2.png
R/hmsc.R
R/identifyCorrelationZeroInflation.R
R/ordination.Rmd
R/permanova.Rmd
R/simulateInteractionPrecisionMatrix.R
R/simulation.Rmd
R/simulation_setup/correctlySpecified.R
R/simulation_setup/groupedSpecies.R
R/simulation_setup/lowRankPlusPerturbations.R
R/simulation_setup/metrics.R
R/simulation_setup/nonlinearities.R
R/simulation_setup/simulation_study_data/correctSpecificationScenarios.csv
R/simulation_setup/simulation_study_data/correctSpecificationScenariosRealistic.csv
R/simulation_setup/simulation_study_data/lowRankPlusScenarios.csv
R/simulation_setup/simulation_study_data/matrices/lfPart_lowRankPlus.RData
R/simulation_setup/simulation_study_data/matrices/perturbPart_lowRankPlus.RData
R/simulation_setup/simulation_study_data/matrices/testMats_blockDiag.RData
R/simulation_setup/simulation_study_data/matrices/testMats_blockDiagSmall.RData
R/simulation_setup/simulation_study_data/matrices/testMats_correctlySpecified.RData
R/simulation_setup/simulation_study_data/matrices/testMats_correctlySpecifiedRealistic.RData
R/simulation_setup/simulation_study_data/matrices/testMats_nonlinear.RData
R/simulation_setup/simulation_study_data/nonlinearScenarios.csv
R/simulation_setup/simulation_study_data/observed_occurrence/testData_blockDiag.RData
R/simulation_setup/simulation_study_data/observed_occurrence/testData_blockDiagSmall.RData
R/simulation_setup/simulation_study_data/observed_occurrence/testData_correctlySpecified.RData
R/simulation_setup/simulation_study_data/observed_occurrence/testData_correctlySpecifiedRealistic.RData
R/simulation_setup/simulation_study_data/observed_occurrence/testData_lowRankPlus.RData
R/simulation_setup/simulation_study_data/observed_occurrence/testData_nonlinear.RData
R/simulation_setup/svdApprox.R
R/someSimulators.Rmd
R/someSimulators.html
README.md
data/bryophytes.rda
python/CommunitySimulator_Exploratory.ipynb
references.bib
simulation_study_background.pdf
simulation_study_background.tex
