Description Usage Arguments Value
The function takes as input 2 data frames, one with the intersection of the ASE calling dataset and the SNP annotation1 and the second the intersection of the ASE calling and SNP annotation2 dataset. These can be obtained by calling the getIntersection(). Each of the data frame objects must have a column named 'cmp.col', e.g. containing the rsid, chr:pos values, that is used to merge the data.
1 | getIntersectionMae(df_aseSnpAnn1, df_aseSnpAnn2)
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df_aseSnpAnn1 |
dataframe object containing the intersection of the ASE calling dataset and SNP annotation1 -the output of getIntersection() |
df_aseSnpAnn2 |
dataframe object containing the intersection of the ASE calling dataset and SNP annotation2 -the output of getIntersection() |
a dataframe object with SNPs common to df_aseSnpAnn1 and df_aseSnpAnn2
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