getIntersectionMae: Get the intersection for MAE -of the ASE calling, SNP...
In karishdsa/ERASE: Extended Randomization for Assessment of Multiple Annotation Enrichment in ASE Datasets
Description
Usage
Arguments
Value
Description
The function takes as input 2 data frames, one with the
intersection of the ASE calling dataset and the SNP annotation1
and the second the intersection of the ASE calling and SNP
annotation2 dataset. These can be obtained by calling the
getIntersection(). Each of the data frame objects must have
a column named 'cmp.col', e.g. containing
the rsid, chr:pos values, that is used to merge the data.
Usage
1
getIntersectionMae(df_aseSnpAnn1, df_aseSnpAnn2)
Arguments
df_aseSnpAnn1
dataframe object containing the intersection
of the ASE calling dataset and SNP annotation1 -the output of
getIntersection()
df_aseSnpAnn2
dataframe object containing the intersection
of the ASE calling dataset and SNP annotation2 -the output of
getIntersection()
Value
a dataframe object with SNPs common to df_aseSnpAnn1 and
df_aseSnpAnn2
karishdsa/ERASE documentation built on May 9, 2019, 2:55 p.m.
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Description Usage Arguments Value
Description
The function takes as input 2 data frames, one with the intersection of the ASE calling dataset and the SNP annotation1 and the second the intersection of the ASE calling and SNP annotation2 dataset. These can be obtained by calling the getIntersection(). Each of the data frame objects must have a column named 'cmp.col', e.g. containing the rsid, chr:pos values, that is used to merge the data.
Usage
1 | getIntersectionMae(df_aseSnpAnn1, df_aseSnpAnn2)
|
Arguments
df_aseSnpAnn1 |
dataframe object containing the intersection of the ASE calling dataset and SNP annotation1 -the output of getIntersection() |
df_aseSnpAnn2 |
dataframe object containing the intersection of the ASE calling dataset and SNP annotation2 -the output of getIntersection() |
Value
a dataframe object with SNPs common to df_aseSnpAnn1 and df_aseSnpAnn2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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