integrationPvalCalc: Runs Integration step and calculates the p-value

In karishdsa/ERASE: Extended Randomization for Assessment of Multiple Annotation Enrichment in ASE Datasets

Description

Runs Integration step and calculates the p-value

Usage

integrationPvalCalc(rdaSnpAnn1, rdaSnpAnn2, outFilePrefix,
  alphaVal = 0.5, nIterations = 10000, seedValue = NULL)

Arguments

rdaSnpAnn1	the transformed zscores rda file name generated by the randomisation step-MAE for the SNPannotation1 - *obsRandomValsMean_zscoreNmlDistr.rda
rdaSnpAnn2	the transformed zscores rda file name generated by the randomisation step-MAE for the SNPannotation2 - *obsRandomValsMean_zscoreNmlDistr.rda
outFilePrefix	The names of all the output files generated will be assigned this prefix
alphaVal	indicates the relative weight of SNPannotaion1. Numeric data type with values from 0 to 1. default = 0.5
nIterations	number of random selction iterations default =10000
seedValue	value of the seed to be set. default = NULL = No seed set

Value

the pnorm p-value for the alpha in parameter alphaVal

karishdsa/ERASE documentation built on May 9, 2019, 2:55 p.m.