prep_binary_data: Pepare gene set matrix and binary gene list

In karltayeb/gseasusie: Gene Set Enrichment Analysis with Multiple Regression

Pepare gene set matrix and binary gene list

Description

Pepare gene set matrix and binary gene list

Usage

prep_binary_data(gs, dat, thresh = 0.01, ptop = NULL, .sign = c(1, -1))

Arguments

gs	a list containing gene set matrix X with genes in rownames and gene set names in 'colnames
dat	a vector of statistics to threshold hold, names must match columns of X
ptop	proportion of genes to include in gene list, if not NULL, overrides thresh
.sign	either c(1, -1), 1, or -1, to indicate including both, positive, or negative betas
threshold	to binarize dat

karltayeb/gseasusie documentation built on March 29, 2025, 2:17 p.m.