gene_expression: Gene Expression Data

In kassambara/ggpubr: 'ggplot2' Based Publication Ready Plots

Gene Expression Data

Description

Gene expression data extracted from TCGA using the 'RTCGA' and 'RTCGA.mRNA' R packages. It contains the mRNA expression for 3 genes - GATA3, PTEN and XBP1- from 3 different datasets: Breast invasive carcinoma (BRCA), Ovarian serous cystadenocarcinoma (OV) and Lung squamous cell carcinoma (LUSC)

Usage

data("gene_expression")

Format

A data frame with 1305 rows and 5 columns.

bcr_patient_barcode

sample ID

dataset

cance type

GATA3

GATA3 gene expression

PTEN

PTEN gene expression

XBP1

XBP1 gene expression.

Examples

data(gene_expression)

ggboxplot(gene_expression, x = "dataset",
y = c("GATA3", "PTEN", "XBP1"),
combine = TRUE,
ylab = "Expression",
color = "dataset", palette = "jco")

kassambara/ggpubr documentation built on Feb. 15, 2023, 4:09 a.m.