combine_mir_pvt: Combine miRNA predicted and validated targets

In kassambara/miRTarget: Find miRNA targets

Description

A helper function for combining miRNA predicted and validated targets. Duplicated miRNA-target interactions are automatically removed.

Usage

combine_mir_pvt(p_targets, v_targets)

Arguments

p_targets, v_targets

an object of class MirTarget

Value

Returns an object of class MirTarget which is a data frame containing combined predicted and validated targets for each miRNA. The final results might contains different status of miRNA-target interactions (MTIs):

• V: for validated MTIs

• P: for predicted MTIs

Author(s)

Alboukadel Kassambara [e-mail]

References

A. Kassambara. Statistical Tools for High-throughput Data Analysis. http://www.sthda.com

Examples

## Not run: 
# Example of miRNAs
miRNAs <- c("hsa-miR-16", "hsa-miR-155")

# Validated target from miRecords
v_targets <- get_mirecords_vt(miRNAs)

# Get predicted target
p_targets <- get_mirecords_pt(miRNAs)

# Combine
targets <- combine_mir_pvt(p_targets, v_targets)
head(targets)

## End(Not run)

kassambara/miRTarget documentation built on May 20, 2019, 7:40 a.m.