metKernel: metKernel

In kateenoel/metImpute: Imputation of DNA Methylation Data

Description

Use radial basis function (RBF) kernel method to impute level of methylation for EPIC platform CpG sites from an HM450 probe set

Usage

metKernel(data450, data850, chrom, path, sigma = NULL)

Arguments

data450	An HM450 data set with CpG sites as columns
data850	An EPIC probe data set with CpG sites as columns
chrom	Indicator of chromosome (e.g. 22 or 'X')
path	Output directory for imputed EPIC probe set and summary statistics
sigma	Optional, if present fixes tuning parameter to value

Examples

metKernel(HM450, EPIC, 22, '/home/project/results')
metKernel(HM450, EPIC, 'X', '/home/project/results', sigma = 0.001)

kateenoel/metImpute documentation built on Dec. 21, 2021, 5:19 a.m.