metRidge: metRidge

In kateenoel/metImpute: Imputation of DNA Methylation Data

Description

Use penalized ridge regression to impute level of methylation for EPIC platform CpG sites from an HM450 probe set

Usage

metRidge(data450, data850, chrom, path)

Arguments

data450	An HM450 probe data set with CpG sites as columns
data850	An EPIC probe data set with CpG sites as columns
chrom	Indicator of chromosome (e.g. 22 or 'X')
path	Output directory for imputed EPIC probe set and summary statistics

Examples

metRidge(HM450, EPIC, 22, '/home/project/results')
metRidge(HM450, EPIC, 'X', '/home/project/results')

kateenoel/metImpute documentation built on Dec. 21, 2021, 5:19 a.m.