mom_nosource: Method of Moments Estimating of Migration Paramter
In kathalexknuts/NeutralTheorySimulations: Simulations for Neutral Theory Analysis
Description
Usage
Arguments
Value
Description
This function estimates the migration parameter, given only data on a local community.
This method is an extension from the paper "Taxa-Abundance Distributions in Microbial Communities Using Environmental
Sequence Data" by Sloan et al.
Usage
1
Arguments
local
A local community of OTU reads for n samples. Rows should be OTUs, Columns should be Samples. A column of taxon indexes should be included at the beginning. Note that if this is not included, the first sample in your data will not be used.
Value
a list of 2 elements. Element 1 is the estimate for the migration parameter. Element 2 is the mean bray curtis dissimilarity in the local community sample.
kathalexknuts/NeutralTheorySimulations documentation built on May 22, 2019, 11:52 p.m.
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Description Usage Arguments Value
Description
This function estimates the migration parameter, given only data on a local community. This method is an extension from the paper "Taxa-Abundance Distributions in Microbial Communities Using Environmental Sequence Data" by Sloan et al.
Usage
1 |
Arguments
local |
A local community of OTU reads for n samples. Rows should be OTUs, Columns should be Samples. A column of taxon indexes should be included at the beginning. Note that if this is not included, the first sample in your data will not be used. |
Value
a list of 2 elements. Element 1 is the estimate for the migration parameter. Element 2 is the mean bray curtis dissimilarity in the local community sample.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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