Man pages for katrikorpela/mare
Microbiota Analysis in R Easily
| AbsoluteAbundances | Translate the relative abundances into absolute abundances... |
| Blast | Create taxonomic tables based on Blast alignment of the reads |
| CAZy | Predict carbohydrate metabolism |
| Clusters | Clustering of bacterial taxa |
| CombineProjects | Combine taxonomic tables and metadata of two projects |
| CommonTaxa | Identify the most abundant and prevalent taxa |
| CopyFiles | Copy the taxonomic tables and move the R session to the new... |
| CorrelationMap | Heatmap of correlations between bacterial taxa and host... |
| CovariatePlot | Plot trend lines of bacterial abundances against a continuous... |
| CovariateTest | Significance Testing |
| FormatRefDB | Create a UDB-format reference database |
| GroupPlot | Visualise group differences |
| HITChip2Seq | Transform HITChip data into taxonomic tables |
| mareGUI | Graphical User Interface for mare |
| mare-package | Microbiota Analysis in R Easily ~~ mare ~~ |
| Organise | Organise the taxonomic tables to match the metadata file |
| PathModel | Test how bacterial taxa and host variables together influence... |
| PCoA | Principal coordinates analysis |
| ProcessReads | Pre-processing of raw 16S amplicon sequences |
| Simple | Pre-processing of raw 16S amplicon sequences and creation of... |
| TaxonomicTable | Create taxonomic tables |
