AbsoluteAbundances | Translate the relative abundances into absolute abundances... |
Blast | Create taxonomic tables based on Blast alignment of the reads |
CAZy | Predict carbohydrate metabolism |
Clusters | Clustering of bacterial taxa |
CombineProjects | Combine taxonomic tables and metadata of two projects |
CommonTaxa | Identify the most abundant and prevalent taxa |
CopyFiles | Copy the taxonomic tables and move the R session to the new... |
CorrelationMap | Heatmap of correlations between bacterial taxa and host... |
CovariatePlot | Plot trend lines of bacterial abundances against a continuous... |
CovariateTest | Significance Testing |
FormatRefDB | Create a UDB-format reference database |
GroupPlot | Visualise group differences |
HITChip2Seq | Transform HITChip data into taxonomic tables |
mareGUI | Graphical User Interface for mare |
mare-package | Microbiota Analysis in R Easily ~~ mare ~~ |
Organise | Organise the taxonomic tables to match the metadata file |
PathModel | Test how bacterial taxa and host variables together influence... |
PCoA | Principal coordinates analysis |
ProcessReads | Pre-processing of raw 16S amplicon sequences |
Simple | Pre-processing of raw 16S amplicon sequences and creation of... |
TaxonomicTable | Create taxonomic tables |
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