API for kauralasoo/txrevise
Extend and revise transcript annotatons.
| Global functions | |
|---|---|
| addMissingInternalExons | Source code |
| addTranscriptAnnotations | Source code |
| applyClassifyDifference | Source code |
| basesDifferent | Man page Source code |
| calculateBasepairDifference | Man page Source code |
| calulateChangesLength | Source code |
| classifyDifference | Source code |
| classifySplicingTable | Source code |
| compareGRanges | Source code |
| compareRanges | Source code |
| constructAlternativeEvents | Man page Source code |
| constructAlternativeEventsWrapper | Man page Source code |
| constructEventMetadata | Man page Source code |
| constructTranscriptBoundaries | Source code |
| dataFrameToGRanges | Man page Source code |
| differenceFromShared | Source code |
| extendSingleTranscript | Man page Source code |
| extendTranscripts | Source code |
| extendTranscriptsPerGene | Man page Source code |
| extractExonsByType | Source code |
| extractFeature | Source code |
| extractGeneData | Man page Source code |
| extractGeneTxMap | Source code |
| fillMissingInternalExons | Man page Source code |
| filterTranscriptMetadata | Man page Source code |
| flattenAlternativeEvents | Man page Source code |
| identifyTranscriptGroups | Man page Source code |
| importTranscriptMetadataFromGTF | Man page Source code |
| indentifyAddedRemovedRegions | Man page Source code |
| intersectCoding | Source code |
| listIntersect | Man page Source code |
| listUnion | Man page Source code |
| makeBinary | Source code |
| makeGeneTranscriptFromExons | Man page Source code |
| makeTranscriptList | Source code |
| markLongestGencodeTranscript | Man page Source code |
| mergeByMaxDifference | Man page Source code |
| mergeGRangesIgnoreMeta | Source code |
| removeFirstExon | Source code |
| removeLastExon | Source code |
| removeMetadata | Source code |
| replaceExtendedTranscripts | Man page Source code |
| reviseAnnotations | Man page |
| reviseAnnotations-package | Man page |
| revisedGffToGrangesList | Source code |
| splitIntoBatches | Man page |
| transcriptsToAnnotations | Man page Source code |
| txIsInList | Source code |
