transcriptsToAnnotations: Convert list of exons to a transcript annotations that can be...
In kauralasoo/txrevise: Extend and revise transcript annotatons.
View source: R/addTranscriptAnnotations.R
transcriptsToAnnotations R Documentation
Convert list of exons to a transcript annotations that can be exported into a GFF file.
Description
Merge Granges object and construct gene and transcript entries. Add proper Parent-Child relationships.
Usage
transcriptsToAnnotations(transcript_list, gene_tx_map)
Arguments
transcript_list
Named list of GRanges objects containing exons of transcripts
(transcripts ids are names of list elements)
gene_tx_map
Data frame mapping transcript ids to gene ids (required columns:
transcript_id, gene_id)
Value
Merged GRanges object containin proper metadata for GFF export.
kauralasoo/txrevise documentation built on March 31, 2022, 12:03 p.m.
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View source: R/addTranscriptAnnotations.R
| transcriptsToAnnotations | R Documentation |
Convert list of exons to a transcript annotations that can be exported into a GFF file.
Description
Merge Granges object and construct gene and transcript entries. Add proper Parent-Child relationships.
Usage
transcriptsToAnnotations(transcript_list, gene_tx_map)
Arguments
transcript_list |
Named list of GRanges objects containing exons of transcripts (transcripts ids are names of list elements) |
gene_tx_map |
Data frame mapping transcript ids to gene ids (required columns: transcript_id, gene_id) |
Value
Merged GRanges object containin proper metadata for GFF export.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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