run_discrete_barplot_analysis: Makes discrete box plots for each parameter in column...

In kazeera/hourglass: This Package Provides Visualizations of Annotated Numeric Data

Makes discrete box plots for each parameter in column annotation

Description

Makes discrete box plots for each parameter in column annotation

Usage

run_discrete_barplot_analysis(
  ds,
  rowAnn1 = 2,
  colAnns = NA,
  parameters = "",
  out_dir = ".",
  gradient_palette = "RdBu"
)

Arguments

ds	A dataset object (a list with vals, rowAnn, colAnn, comparison, name).
rowAnn1	A column index (numeric) or name in ds$rowAnn indicating which groups to stratify by.
colAnns	A character vector of 1-2 column names in ds$colAnn. c(Parameter, Feature/Stain/Gene)
parameters	Group names or parameters in colAnn1 that required its own barplot
gradient_palette	RColorBrewer palette name for gradients (e.g. heatmap, correlation plots). See RColorBrewer::display.brewer.all() for all options.

kazeera/hourglass documentation built on April 5, 2025, 7:18 a.m.