run_het_analysis: Runs heterogeneity analysis for custom comparison, look at...

In kazeera/hourglass: This Package Provides Visualizations of Annotated Numeric Data

Runs heterogeneity analysis for custom comparison, look at expression levels within samples of same patient

Description

Runs heterogeneity analysis for custom comparison, look at expression levels within samples of same patient

Usage

run_het_analysis(ds, rowAnn1, pID = 1, out_dir = ".", var_colors = NULL)

Arguments

ds	A dataset object (a list with vals, rowAnn, colAnn, comparison, name).
rowAnn1	Column in ds$vals and was created in ds$rowAnn as a CustomComparison
pID	short for patient ID, column name in ds$rowAnn to count samples for
out_dir	The output folder path
var_colors	A named vector with colors as values and annotations/groups as names.

kazeera/hourglass documentation built on April 5, 2025, 7:18 a.m.