run_correlation: Calculate correlations

In kbroman/GNapi: Connection to the GeneNetwork API

Calculate correlations

Description

Find correlated traits in GeneNetwork

Usage

run_correlation(
  dataset,
  group,
  trait,
  type = c("sample", "tissue"),
  method = c("pearson", "spearman"),
  n_results = 500,
  url = gnapi_url()
)

Arguments

dataset	Name of database for the trait (Short_Abbreviation)
group	Target database name to be correlated against
trait	ID for trait used for correlation
type	Sample or tissue correlation
method	Pearson or Spearman correlation
n_results	Number of results to return
url	The URL for the GeneNetwork API

Value

Data frame

Examples

out <- run_correlation("HC_M2_0606_P", "BXDPublish", "1427571_at")

kbroman/GNapi documentation built on July 29, 2023, 10:10 a.m.