run_gemma: Run gemma

In kbroman/GNapi: Connection to the GeneNetwork API

Run gemma

Description

Perform a genome scan using gemma

Usage

run_gemma(dataset, trait, use_loco = FALSE, maf = 0.01, url = gnapi_url())

Arguments

dataset	ID for dataset being used (Short_Abbreviation)
trait	ID for trait being mapped
use_loco	Whether to use LOCO (leave one chromosome out)
maf	Filter on minor allele frequency
url	The URL for the GeneNetwork API

Value

A data frame

Examples

out <- run_gemma("HC_M2_0606_P", "1418701_at")

kbroman/GNapi documentation built on July 29, 2023, 10:10 a.m.