plot_scan1_circ: plot a genome scan as a circle

In kbroman/circplot: Circular Plots

Description

Plot LOD curves for a genome scan as a circle

Usage

plot_scan1_circ(
  x,
  map,
  lodcolumn = 1,
  chr = NULL,
  gap = NULL,
  rlim = c(5, 6),
  start_angle = pi,
  clockwise = TRUE,
  xlim = NULL,
  ylim = NULL,
  chr_labels = TRUE,
  ...
)

Arguments

x	Output of qtl2::scan1()
map	A list of vectors of marker positions, as produced by qtl2::insert_pseudomarkers().
lodcolumn	LOD score column to plot (a numeric index, or a character string for a column name). Only one value allowed.
chr	Selected chromosomes to plot; a vector of character strings.
gap	Gap between chromosomes. The default is 1% of the total genome length.
rlim	radius limits
start_angle	angle to start
clockwise	If true, go clockwise
xlim	x-axis limits
ylim	y-axis limits
chr_labels	Whether to add chromosome labels
...	Additional graphics parameters

Value

No return value

kbroman/circplot documentation built on Feb. 11, 2022, 12:18 a.m.