| DHpop_geno | Name of the file containing genotypic (marker scores)... | 
| DHpop_map | Name of the file containing genotypic (marker scores)... | 
| DHpop_pheno | Name of the file containing genotypic (marker scores)... | 
| mq.diagnostics | Performs molecular markers quality diagnostics. | 
| pq.diagnostics | Performs phenotypic data quality diagnostics. | 
| qtl.analysis | Performs a balanced population QTL mapping analysis. | 
| qtl.cross | Read genomic data to perform QTL analyses. | 
| qtl.memq | Performs Multi-Environment (or Multi-Trait) Multi-QTL... | 
| SxM_geno | Name of the file containing genotypic (marker scores)... | 
| SxM_map | Name of the file containing genotypic (marker scores)... | 
| SxM_pheno | Name of the file containing phenotypic information. | 
| SxMxE_pheno | Name of the file containing phenotypic information. | 
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