write_probs: Write genotype probabilities to database
In kbroman/qtl2mongo: Storage of QTL Objects in Mongo Databases

Description Usage Arguments Details Value See Also Examples

Write genotype probabilities to database

1 2	write_probs(db, probs, map = NULL, url = "mongodb://localhost", quiet = TRUE)

`db`	Name of database
`probs`	Genotype probabilities, as calculated by `calc_genoprob`.
`map`	Optional map of marker positions (a list of vectors of positions).
`url`	URL for mongo server
`quiet`	If FALSE, print some information about progress.

The genotype probabilities are written to a single Mongo database in a pair of collections.

The data are placed in a series of tables.

probs - the probabilities, with fields marker, chr, marker_index, probs, and potentially pos.
chr - chromosome information, with fields chr, is_x_chr, geno
meta - Other information, with fields ind, alleles, crosstype, alleleprobs

None. (See Details.)

read_probs

## Not run: 
library(qtl2geno)
iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2geno"))
map <- insert_pseudomarkers(iron, map, error_prob=0.002)
pr <- calc_genoprob(iron, map)

write_probs(db="iron_probs", pr, map)

## End(Not run)