iplotMap: Interactive genetic map plot

In kbroman/qtlcharts: Interactive Graphics for QTL Experiments

Interactive genetic map plot

Description

Creates an interactive graph of a genetic marker map.

Usage

iplotMap(
  map,
  chr = NULL,
  shift = FALSE,
  horizontal = FALSE,
  chartOpts = NULL,
  digits = 5
)

Arguments

map	Object of class '"map"', a list with each component being a vector of marker positions. You can also provide an object of class '"cross"', in which case the map is extracted with [qtl::pull.map()].
chr	(Optional) Vector indicating the chromosomes to plot.
shift	If TRUE, shift each chromsome so that the initial marker is at position 0.
horizontal	If TRUE, have chromosomes arranged horizontally
chartOpts	A list of options for configuring the chart. Each element must be named using the corresponding option.
digits	Round data to this number of significant digits before passing to the chart function. (Use NULL to not round.)

Value

An object of class 'htmlwidget' that will intelligently print itself into HTML in a variety of contexts including the R console, within R Markdown documents, and within Shiny output bindings.

See Also

[iplotScanone()], [iplotPXG()]

Examples

library(qtl)
data(hyper)
map <- pull.map(hyper)

iplotMap(map, shift=TRUE)

kbroman/qtlcharts documentation built on May 10, 2023, 6:07 p.m.