Man pages for kbroman/simcross
Simulate Experimental Crosses
| AILped | Example AIL pedigree |
| calc_Lstar | Calculate adjusted chromosome length for obligate chiasma |
| CCcolors | Collaborative Cross colors |
| check_pedigree | Check a pedigree for errors |
| collapse_do_alleles | Collapse alleles for simulated DO genotypes |
| convert2geno | Convert continuous allele information into marker genotypes |
| convert2geno_allchr | Convert continuous allele information into marker genotypes... |
| create_parent | Create a parent object |
| cross | Cross two individuals |
| get_geno | Get genotype at a single position |
| mouseL_cox | Mouse chromosome lengths |
| mouseL_mgi | Mouse chromosome lengths |
| plot_crosslines | Plot cross lines |
| plot_ind | Plot an individual |
| sim_4way_pedigree | Simulate pedigree for 4-way intercross |
| sim_ail_pedigree | Simulate AIL pedigree |
| sim_ail_pedigree_fix_n | Simulate AIL pedigree with fixed n |
| sim_crossovers | Simulate crossover locations using the Stahl model |
| sim_dof1_pedigree | Simulate pedigree for F1 between diversity outbreds and... |
| sim_do_pedigree | Simulate a pedigree for Diversity Outbred mice |
| sim_do_pedigree_fix_n | Simulate a pedigree for Diversity Outbreds for a target... |
| sim_from_pedigree | Simulate genotypes for pedigree |
| sim_from_pedigree_allchr | Simulate genotypes for pedigree for multiple chromosomes |
| sim_meiosis | Simulate meiosis |
| sim_ril_pedigree | Generate a ril pedigree |
| where_het | Find heterozygous regions |
