plot_multi()
now supports pheatmap
test_data
folder is now inst/extdata
Some bug fixes for plot_expr()
This release contains new features and some internal updates. In addition, this release now requires R version 3.1 or higher and ggplot2 version 2.0 or higher.
show_guides
with show.legend
to match API of ggplot2 version 2.*. plot_multi
has been further developed: heatmap.2
from gplots package to produce heatmap. To minimize dependencies, this package is optional and needs to be manually installed (install.packages("gplots")
). In the absence of gplots, ggplot2 will be used as before.cluster_rows
and cluster_cols
, respectively.fill
option for providing custom colours?plot_multi
for full set of optionslines
optionplot
in plot_event
and plot_expr
is deprecated (will issue warning if used). This release contains minor updates.
plot_event
: default ylim
changed to (0,100) from (1,100).Version 2.0.0 now uses ggplot2 to generate plots in plot_event
and
plot_expr
. In addition to outputting a plot, a ggplot2 object is returned.
plot = FALSE
.lines
in plot_event
and plot_expr
is deprecated (will issue
warning if used).plot_multi
: a new experimental function that will generate a heatmap of PSI
values for two or more events:plot_multi(psi)
las = 1
)plot_expr()
(#2)plot_expr
: psiplot can now plot cRPKMs. For example, using the new sample
dataset crpkm
:plot_expr(crpkm[1,], config = config)
psi
and config
(#1)xlim
argument in plot_event
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