prep_cov: function to prepare covearge data for decomposition
In kcygan/dryclean: rPCA based method to de-noise genomic coverage data
Description
Usage
Arguments
Value
Author(s)
Description
preapares the GC corrected coverage data for decomposition
Usage
1
Arguments
m.vec
GRanges object. GRanges containing GC corrected reads as a cloumn in metadata
blacklist,
boolean (default == FALSE). Whether to exclude off-target markers in case of Exomes or targeted sequqnecing. If set to TRUE, needs a GRange marking if each marker is set to be excluded or not.
burnin.samples.path,
character (default = NA). Path to balcklist markers file
Value
vector of length m with processed coverage data
Author(s)
Aditya Deshpande
kcygan/dryclean documentation built on Feb. 13, 2020, 12:34 a.m.
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Description Usage Arguments Value Author(s)
Description
preapares the GC corrected coverage data for decomposition
Usage
1 |
Arguments
m.vec |
GRanges object. GRanges containing GC corrected reads as a cloumn in metadata |
blacklist, |
boolean (default == FALSE). Whether to exclude off-target markers in case of Exomes or targeted sequqnecing. If set to TRUE, needs a GRange marking if each marker is set to be excluded or not. |
burnin.samples.path, |
character (default = NA). Path to balcklist markers file |
Value
vector of length m with processed coverage data
Author(s)
Aditya Deshpande
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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