API for kenkellner/ubms
Bayesian Models for Data from Unmarked Animals using 'Stan'

Global functions
$,ubmsFitList-method Man page
Nmix_chisq Source code
RSR Man page Source code
Z_matrix Source code
[,ubmsFit,character,missing,missing-method Man page
[,ubmsFitList,numeric,missing,missing-method Man page
[,ubmsSubmodelList,character,missing,missing-method Man page
[[,ubmsFitList,numeric,missing-method Man page
add_placeholder_priors Source code
autoscale_prior Source code
b_names Source code
b_par Source code
beta_names Source code
beta_par Source code
build_stan_inputs Source code
calculate_par Source code
cauchy Man page Source code
check_formula Source code
check_newdata Source code
check_return_inputs Source code
check_type Source code
coef,ubmsFit-method Man page
col_is_factor Source code
combine_same_name Source code
dist_code Source code
distprob_exp_line Source code
distprob_exp_point Source code
distprob_haz_line Source code
distprob_haz_point Source code
distprob_normal_line Source code
distprob_normal_point Source code
drop_final_year Source code
empty_loo Source code
exp_counts_occu Source code
exp_counts_occuRN Source code
expand_model_matrix Source code
expand_prior Source code
expect_RMSE Source code
expect_between Source code
extract,ubmsFit-method Man page
extract_log_lik Man page
extract_log_lik,ubmsFit-method Man page
extract_log_lik,ubmsFitDistsamp-method Man page
extract_missing_sites Source code
extract_posterior Source code
fitList Man page
fitList,list-method Man page
fitList,ubmsFit-method Man page
fit_class Source code
fit_model Source code
fitted,ubmsFit-method Man page
gamma Man page Source code
generate_inds Source code
getY,ubmsFit-method Man page
get_area Source code
get_area_adjust Source code
get_baseline_df Source code
get_binned_residuals Source code
get_breaks Source code
get_cohorts Source code
get_conv_const Source code
get_detfun Source code
get_elapsed_time,ubmsFit-method Man page
get_group_vars Source code
get_hist_data Source code
get_link_name Source code
get_loglik_colext Source code
get_loglik_multinomPois Source code
get_loglik_occu Source code
get_loglik_occuRN Source code
get_loglik_occuTTD Source code
get_loglik_pcount Source code
get_loo Source code
get_margplot_data Source code
get_max_obs Source code
get_mean_line Source code
get_n_pers Source code
get_nrandom Source code
get_obs_counts Source code
get_p_for_multinom Source code
get_pi_for_multinom Source code
get_pifun_type Source code
get_reTrms Source code
get_row_reps Source code
get_rsr_info Source code
get_runtime Source code
get_sample_lines Source code
get_samples Source code
get_sparse_Z Source code
get_stancode,ubmsFit-method Man page
get_xlev Source code
gof Man page
gof,ubmsFitAbun-method Man page
gof,ubmsFitOccu-method Man page
has_intercept Source code
is_placeholder Source code
kfold,ubmsFit-method Man page
laplace Man page Source code
ll_fold Source code
logistic Man page Source code
loglik_saved Source code
loo,ubmsFit-method Man page
marg_factor_plot Source code
marg_numeric_plot Source code
marginal_covariate_plot Source code
modSel,ubmsFitList-method Man page
name_to_modelcode Source code
name_to_stanmodel Source code
names,ubmsFit-method Man page
names,ubmsFitList-method Man page
normal Man page Source code
nsamples,ubmsFit-method Man page
null_prior Source code
placeholderSubmodel Source code
plot,ubmsFit,ANY-method Man page
plot,ubmsGOF,ANY-method Man page
plot_RSR Source code
plot_binned_residuals Source code
plot_effects Man page
plot_effects,ubmsFit-method Man page
plot_marginal Man page
plot_marginal,ubmsFit-method Man page
plot_pearson_residuals Source code
plot_posteriors Man page
plot_posteriors,ubmsFit-method Man page
plot_residuals Man page
plot_residuals,ubmsFit-method Man page
plot_spatial Man page Source code
plot_theme Source code
posterior_linpred Man page
posterior_linpred,ubmsFit-method Man page
posterior_predict Man page
posterior_predict,ubmsFit-method Man page
predict Man page
predict,ubmsFit-method Man page
predict_raster Source code
predict_terra Source code
priors Man page
process_coef_prior Source code
process_covs Source code
process_int_prior Source code
process_sigma_prior Source code
process_stanfit Source code
process_z Source code
projected Man page
projected,ubmsFitColext-method Man page
ranef Man page
ranef,ubmsFit-method Man page
rebuild_inputs Source code
remove_RSR Source code
remove_offset Source code
remove_placeholders Source code
removed_sites Source code
residuals,ubmsFit-method Man page
sig_par Source code
sigma_names Source code
sim_projected Source code
sim_turnover Source code
simz_multinom Source code
simz_occuRN Source code
simz_pcount Source code
split_formula Source code
split_p_by_T Source code
split_psi_by_T Source code
split_response_by_T Source code
stan_colext Man page Source code
stan_distsamp Man page Source code
stan_multinomPois Man page Source code
stan_occu Man page Source code
stan_occuRN Man page Source code
stan_occuTTD Man page Source code
stan_pcount Man page Source code
student_t Man page Source code
submodel_set_missing Source code
submodel_types Source code
summary,ubmsFit-method Man page
traceplot,ubmsFit-method Man page
turnover Man page
turnover,ubmsFitColext-method Man page
ubms Man page
ubms-package Man page
ubmsFit Source code
ubmsFitList-extractors Man page
ubmsGOF Source code
ubmsResponse Source code
ubmsResponseDistsamp Source code
ubmsResponseMultinomPois Source code
ubmsResponseOccuTTD Source code
ubmsSubmodel Source code
ubmsSubmodelList Source code
ubmsSubmodelScalar Source code
ubmsSubmodelSpatial Source code
ubmsSubmodelTransition Source code
uniform Man page Source code
waic,ubmsFit-method Man page
was_parallel Source code
which_per_sampled Source code
kenkellner/ubms documentation built on March 1, 2025, 7:02 a.m.