projected: Projected Occupancy Trajectories

In kenkellner/ubms: Bayesian Models for Data from Unmarked Animals using 'Stan'

Projected Occupancy Trajectories

Description

Generate posterior draws of occupancy probability for all sites and primary periods, i.e. the projected trajectory (Weir et al. 2009).

Usage

projected(object, ...)

## S4 method for signature 'ubmsFitColext'
projected(object, draws = NULL, re.form = NULL, ...)

Arguments

object	A fitted dynamic occupancy model of class inheriting ubmsFit
...	Currently ignored
draws	Number of draws from the posterior to use in the check
re.form	If NULL, any estimated group-level parameters ("random effects") are included. If NA, they are ignored

Value

A matrix of occupancy values from the posterior predictive distribution. The dimensions are draws by number of sites x primary periods in site-major order.

References

Weir LA, Fiske IJ, Royle J. 2009. Trends in Anuran Occupancy from Northeastern States of the North American Amphibian Monitoring Program. Herpetological Conservation and Biology. 4: 389-402.

See Also

stan_colext

kenkellner/ubms documentation built on March 1, 2025, 7:02 a.m.