Man pages for kenkellner/ubms
Bayesian Models for Data from Unmarked Animals using 'Stan'

coef-ubmsFit-methodExtract Coefficient Values From a ubmsFit Model
extract_log_likExtract Pointwise Log-likelihood From Model
extract-ubmsFit-methodExtract Samples From a ubmsFit Model
fitList-ubmsFit-methodCreate a List of ubmsFit Models
fitted-ubmsFit-methodExtract Fitted Values
get_elapsed_time-ubmsFit-methodGet Model Runtime
get_stancode-ubmsFit-methodGet Stan Code From Model
getY-ubmsFit-methodExtract y, the Response Variable, From a ubmsFit Model
gofCheck model goodness-of-fit
kfold-ubmsFit-methodK-fold Cross-validation of a ubmsFit Model
loo-ubmsFit-methodLeave-one-out Cross Validation
modSel-ubmsFitList-methodModel Selection For a List of ubmsFit Models
names-ubmsFitList-methodGet Names of Models in a ubmsFitList
names-ubmsFit-methodGet Parameter Names From a ubmsFit Model
nsamples-ubmsFit-methodGet number of Posterior Samples Stored in a ubmsFit Model
plot_effects-ubmsFit-methodPlot Marginal Effects of Covariates
plot_posteriors-ubmsFit-methodPlot Posterior Distributions
plot_residuals-ubmsFit-methodPlot Model Residuals
plot_spatialPlot A Map of the State Parameter Based on a Spatial ubms...
plot-ubmsFit-ANY-methodPlot Residuals For All Submodels in a ubmsFit Model
posterior_linpred-ubmsFit-methodPosterior Distribution of the Linear Predictor
posterior_predict-ubmsFit-methodDraw from the posterior predictive distribution
predict-ubmsFit-methodPredict parameter values from a fitted model
priorsPrior distributions
projectedProjected Occupancy Trajectories
ranef-ubmsFit-methodExtract Random Effects
residuals-ubmsFit-methodExtract Model Residuals
RSRGet Information for a Restricted Spatial Regression Model
stan_colextFit the MacKenzie et al. (2003) Dynamic Occupancy Model
stan_distsampFit the Royle et al. (2004) Distance Sampling Model
stan_multinomPoisFit the Multinomial-Poisson Mixture Model
stan_occuFit the MacKenzie et al. (2002) Occupancy Model
stan_occuRNFit the Occupancy Model of Royle and Nichols (2003)
stan_occuTTDFit Time-to-detection Occupancy Models
stan_pcountFit the N-mixture model of Royle (2004)
sub-ubmsFit-character-missing-missing-methodExtract a Submodel from a ubmsFit Model
sub-ubmsSubmodelList-character-missing-missing-methodExtract a ubmsSubmodel From a ubmsSubmodelList Object
summary-ubmsFit-methodExtract Summary Statistics from a ubmsFit Model
traceplot-ubmsFit-methodMarkov Chain Traceplots
turnoverTurnover Probability
ubmsubms
ubmsFitList-extractorsExtractors for ubmsFitList objects Extract parts of...
waic-ubmsFit-methodWidely Applicable Information Criterion (WAIC)
kenkellner/ubms documentation built on March 1, 2025, 7:02 a.m.