kennethabarr/CormotifCounts: Correlation Motif Fit

Cormotif is a useful tool for identifying patterns of shared DE between experiments, but was designed with Microarray's in mind. It uses limma, but does not take advantage of precision weights provided by voom. This package provides small updates to the Cormotif code so that users can run it on count data from RNA-seq.

Getting started

Package details

AuthorKenneth Barr, Hongkai Ji, Yingying Wei
Bioconductor views DifferentialExpression Microarray
MaintainerKenneth Barr <kenneth.a.barr@gmail.com>
LicenseGPL-2
Version1.39.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("kennethabarr/CormotifCounts")
kennethabarr/CormotifCounts documentation built on Sept. 6, 2024, 11:57 a.m.