plotIC: BIC and AIC plot

In kennethabarr/CormotifCounts: Correlation Motif Fit

BIC and AIC plot

Description

This function plots BIC and AIC values for all fitted motif models.

Usage

plotIC(fitted_cormotif)

Arguments

fitted_cormotif

The object obtained from cormotiffit.

Details

The left graph is the BIC plot and the right graph is the AIC plot.

Author(s)

Hongkai Ji, Yingying Wei

References

Ji, H., Wei, Y.,(2011) Correlation Motif. Unpublished

Examples

data(simudata2)
n<-nrow(simudata2)
m<-ncol(simudata2)
#the expression data is from the second column to \eqn{m}
exprs.simu2<-as.matrix(simudata2[,2:m])

#prepare the group ID number for each sample array
data(simu2_groupid)

#prepare the design matrix for each group of samples
data(simu2_compgroup)

#fit 2 correlation motif to the data
motif.fitted<-cormotiffit(exprs.simu2, simu2_groupid,simu2_compgroup,K=2)

plotIC(motif.fitted)

kennethabarr/CormotifCounts documentation built on Sept. 6, 2024, 11:57 a.m.