Description Usage Arguments Examples
Organizing p-values and methylation differences between groups into a single data frame
1 | limmaTable(dat, p, fit, grouping, contrast.matrix, adj.method, pval)
|
dat |
a matrix of the values of interest with the corresponding sample labels and probe labels |
p |
a dataframe containing the group column matched with the sample labels in dat |
fit |
a limma fit |
grouping |
the name of the column in which has the group parameter |
contrast.matrix |
a model matrix; make sure the levels of the contrasts are the same as the levels in the grouping variable |
adj.method |
the multiple testings correction method as used in topTable function, i.e. fdr BH etc. |
pval |
the desired p-value |
1 |
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