limmaTable: A summary function for limma fits

Description Usage Arguments Examples

Description

Organizing p-values and methylation differences between groups into a single data frame

Usage

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limmaTable(dat, p, fit, grouping, contrast.matrix, adj.method, pval)

Arguments

dat

a matrix of the values of interest with the corresponding sample labels and probe labels

p

a dataframe containing the group column matched with the sample labels in dat

fit

a limma fit

grouping

the name of the column in which has the group parameter

contrast.matrix

a model matrix; make sure the levels of the contrasts are the same as the levels in the grouping variable

adj.method

the multiple testings correction method as used in topTable function, i.e. fdr BH etc.

pval

the desired p-value

Examples

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kennylouie/kdevtools documentation built on May 28, 2019, 3:37 p.m.