| ancestry_chunks | Chunks |
| check_intersect | Simulation tools |
| create_all_inputs | Input tools |
| create_input_eila | Input tools |
| create_input_hapmix | Input tools |
| create_input_loter | Input tools |
| create_input_pcadapt | Input tools |
| create_input_RASPberry | Input tools |
| create_input_rfmix | RFMix |
| detect_cpp | Peak detection |
| display.ancestry | Ancestry tools |
| eila_from_pcadapt | Input tools |
| generate_hybrid_matrix | Simulation tools |
| generate_one_hybrid | Simulation tools |
| get_dist_pop | Simulation tools |
| haplo_to_ancestry | Ancestry tools |
| haplo_to_geno | Convert haplotypes to genotypes |
| jumps_from_map | Jumps |
| number.to.string | Utils |
| rfmix.local.ancestry | Ancestry tools |
| sample_introgression_regions | Sample introgression regions |
| simu.write.ancstrl | Simulation tools |
| stat.by.window | Utils |
| top | Utils |
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