create_all_inputs: Input tools
In keurcien/simulate: Introgression simulations

create_all_inputs

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create_all_inputs(refpop1_integer, refpop2_integer, refpop1, refpop2, H.integer,
  H, true.ancestry.matrix, directory, pos_map, gen_map, chr, ref, alt, pop,
  parameters, gt.df)

`refpop1_integer`	a haplotype matrix.
`refpop2_integer`	a haplotype matrix.
`refpop1`	a haplotype matrix.
`refpop2`	a haplotype matrix.
`H.integer`	a haplotype matrix.
`H`	a haplotype matrix.
`true.ancestry.matrix`	a matrix.
`directory`	a character string.
`pos_map`	a numeric vector.
`gen_map`	a numeric vector.
`chr`	an integer.
`ref`	a numeric vector.
`alt`	a numeric vector.
`pop`	a numeric vector.
`parameters`	a data.frame.
`gt.df`	a data.frame.