README.md

In kevinrue/BioSeurat: Converter from Seurat to SingleCellExperiment

BioSeurat

Overview

This package aims at making seurat objects accessible for downstream processing using common Bioconductor methods and classes. In particular, the most readily equivalent Bioconductor class apt to store the various components of a seurat object is the SingleCellExperiment class (SingleCellExperiment package). Indeed, the SingleCellExperiment class contains slots to store: any number of assays, that encompasses the @raw.data, @data, and @scaled.data slots of a seurat object. sample meta-data, that corresponds to the @meta.data slot of a seurat object. feature meta-data, that encompasses the presence of individual genes in the @var.genes slot of a seurat object any number of reduced dimensions sets of coordinates, that are usually stored under the @dr slot of a seurat object

Installation

The r Githubpkg("kevinrue/BioSeurat") package is currently hosted on GitHub, and may be installed as follows:

{r install, eval=FALSE} devtools::install_github("kevinrue/BioSeurat", build_vignettes = TRUE)

kevinrue/BioSeurat documentation built on May 27, 2019, 2:09 p.m.