as: Convert 'seurat' to 'SingleCellExperiment' objects

In kevinrue/BioSeurat: Converter from Seurat to SingleCellExperiment

Description

Convert seurat to SingleCellExperiment objects

Arguments

from	A seurat object.

Value

A SingleCellExperiment object.

Examples

# Example data ----

stopifnot(require(Seurat))
pbmc_raw <- read.table(
  file = system.file('extdata', 'pbmc_raw.txt', package = 'Seurat'),
  as.is = TRUE
)
pbmc_small <- CreateSeuratObject(raw.data = pbmc_raw)
pbmc_small

# Example ----

as(pbmc_small, "SingleCellExperiment")

kevinrue/BioSeurat documentation built on May 27, 2019, 2:09 p.m.