list_genes: Returns the genes associated with a Gene Ontology

In kevinrue/GOexpress: Visualise microarray and RNAseq data using gene ontology annotations

Description

Given a Gene Ontology (GO) identifier represented in the dataset, returns a character vector listing the feature identifiers annotated to it.

Usage

list_genes(go_id, result, data.only=TRUE)

Arguments

go_id	A Gene Ontology (GO) identifier represented in the dataset.
result	The output of GO_analyse() or a subset of it obtained from subset_scores().
data.only	Whether to return only the feature identifiers present in the given dataset or alternatively returns all feature identifiers associated with the GO term in the Ensembl BioMart. Default is TRUE.

Value

A character vector listing the feature identifiers of the genes associated with the GO term.

Author(s)

Kevin Rue-Albrecht

See Also

Method GO_analyse.

Examples

# load the sample output data
data(AlvMac_results)

# List of genes associated with the GO term "toll-like receptor 4 signaling
# pathway"
list_genes(result=AlvMac_results, go_id="GO:0034142")

kevinrue/GOexpress documentation built on May 19, 2020, 7:23 p.m.